SNP Detail For rs2854275
1.Mapping Information
Human SNP ID rs2854275
Human chromosome chr6
Human SNP position 32660651
Pig chromosome chr7
Pig SNP position 29181513
2.Annotation Information
PubMed ID23326239
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23326239
StudyA genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1).
Disease/TraitEpstein-Barr virus immune response (EBNA-1)
Initial sample1,367 Mexican American indivduals
Replication sample589 Mexican American indivduals
Region6p21.32
Chromosome idchr6
Chromosome position32660651
Reported genePSORS1C1, BAT2, EHMT2, HLA-DQB1, C6orf15, BAT4, NOTCH4, PRRT1, HLA-B
Mapped geneHLA-DQB1
Upstream gene id
Downstream gene id
SNP gene ids3119
Upstream gene distance
Downstream gene distance
SNP risk allelers2854275-T
SNPsrs2854275
Merged0
SNP id current2854275
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.064
P value0.0000000002
Pvalue mlog9.69897000433601
P value text(Conditional on rs477515 - Quantitative)
Or beta0.45
%95 Ci[NR] unit decrease
PlatformIllumina [944565]
CNVN
Mapped traitantibody measurement, Epstein-Barr virus infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004556, http://www.ebi.ac.uk/efo/EFO_0000769
Study accessionGCST001812