Human SNP ID | rs2854275 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32660651 |
Pig chromosome | chr7 |
Pig SNP position | 29181513 |
PubMed ID | 23326239 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23326239 |
Study | A genome-wide integrative genomic study localizes genetic factors influencing antibodies against Epstein-Barr virus nuclear antigen 1 (EBNA-1). |
Disease/Trait | Epstein-Barr virus immune response (EBNA-1) |
Initial sample | 1,367 Mexican American indivduals |
Replication sample | 589 Mexican American indivduals |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32660651 |
Reported gene | PSORS1C1, BAT2, EHMT2, HLA-DQB1, C6orf15, BAT4, NOTCH4, PRRT1, HLA-B |
Mapped gene | HLA-DQB1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3119 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2854275-T |
SNPs | rs2854275 |
Merged | 0 |
SNP id current | 2854275 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.064 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | (Conditional on rs477515 - Quantitative) |
Or beta | 0.45 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [944565] |
CNV | N |
Mapped trait | antibody measurement, Epstein-Barr virus infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004556, http://www.ebi.ac.uk/efo/EFO_0000769 |
Study accession | GCST001812 |