SNP Detail For rs2853552
1.Mapping Information
Human SNP ID rs2853552
Human chromosome chr7
Human SNP position 18940644
Pig chromosome chr9
Pig SNP position 97182179
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region7p21.1
Chromosome idchr7
Chromosome position18940644
Reported geneHDAC9
Mapped geneHDAC9
Upstream gene id
Downstream gene id
SNP gene ids9734
Upstream gene distance
Downstream gene distance
SNP risk allelers2853552-A
SNPsrs2853552
Merged0
SNP id current2853552
Contextintron_variant
Intergenic0
Allele frequency0.26
P value0.000007
Pvalue mlog5.15490195998574
P value text(BMI z-score change )
Or beta0.03
%95 Ci[NR] SD/y increase
PlatformIllumina [899892]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST001762