SNP Detail For rs28523990
1.Mapping Information
Human SNP ID rs28523990
Human chromosome chr7
Human SNP position 124796085
Pig chromosome chr18
Pig SNP position 24540500
2.Annotation Information
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitLewy body disease
Initial sampleup to 3,526 individuals
Replication sampleNA
Region7q31.33
Chromosome idchr7
Chromosome position124796085
Reported geneintergenic
Mapped geneLOC154872 - POT1
Upstream gene id154872
Downstream gene id25913
SNP gene ids
Upstream gene distance5275
Downstream gene distance26301
SNP risk allelers28523990-T
SNPsrs28523990
Merged0
SNP id current28523990
Contextintergenic_variant
Intergenic1
Allele frequency0.282
P value0.000007
Pvalue mlog5.15490195998574
P value text(Ordinal I)
Or beta0.2719
%95 Ci[0.15-0.39] unit decrease
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitLewy body dementia, Lewy body dementia measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006792, http://www.ebi.ac.uk/efo/EFO_0006799
Study accessionGCST002591