SNP Detail For rs28493229
1.Mapping Information
Human SNP ID rs28493229
Human chromosome chr19
Human SNP position 40718299
Pig chromosome chr6
Pig SNP position 44629080
2.Annotation Information
PubMed ID22081228
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22081228
StudyGenome-wide association study identifies FCGR2A as a susceptibility locus for Kawasaki disease.
Disease/TraitKawasaki disease
Initial sample405 European ancestry cases, 6,252 European ancestry controls
Replication sample605 European ancestry cases and 1,349 European ancestry controls from 740 families, 135 cases and 270 controls from 135 families, 1,028 East Asian ancestry cases, 1,512 East Asian ancestry controls
Region19q13.2
Chromosome idchr19
Chromosome position40718299
Reported geneITPKC, MIA, RAB4B
Mapped geneITPKC
Upstream gene id
Downstream gene id
SNP gene ids80271
Upstream gene distance
Downstream gene distance
SNP risk allelers28493229-?
SNPsrs28493229
Merged0
SNP id current28493229
Contextintron_variant
Intergenic0
Allele frequency0.13
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta1.52
%95 Ci[1.35-1.70]
PlatformIllumina [494236]
CNVN
Mapped traitmucocutaneous lymph node syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004246
Study accessionGCST001322