Human SNP ID | rs28493229 |
---|---|
Human chromosome | chr19 |
Human SNP position | 40718299 |
Pig chromosome | chr6 |
Pig SNP position | 44629080 |
PubMed ID | 22081228 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22081228 |
Study | Genome-wide association study identifies FCGR2A as a susceptibility locus for Kawasaki disease. |
Disease/Trait | Kawasaki disease |
Initial sample | 405 European ancestry cases, 6,252 European ancestry controls |
Replication sample | 605 European ancestry cases and 1,349 European ancestry controls from 740 families, 135 cases and 270 controls from 135 families, 1,028 East Asian ancestry cases, 1,512 East Asian ancestry controls |
Region | 19q13.2 |
Chromosome id | chr19 |
Chromosome position | 40718299 |
Reported gene | ITPKC, MIA, RAB4B |
Mapped gene | ITPKC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80271 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs28493229-? |
SNPs | rs28493229 |
Merged | 0 |
SNP id current | 28493229 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.13 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | 1.52 |
%95 Ci | [1.35-1.70] |
Platform | Illumina [494236] |
CNV | N |
Mapped trait | mucocutaneous lymph node syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004246 |
Study accession | GCST001322 |