SNP Detail For rs28479400
1.Mapping Information
Human SNP ID rs28479400
Human chromosome chr15
Human SNP position 99455679
Pig chromosome chr1
Pig SNP position 154418456
2.Annotation Information
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitNeuritic plaque
Initial sampleup to 4,232 individuals
Replication sampleNA
Region15q26.3
Chromosome idchr15
Chromosome position99455679
Reported geneintergenic
Mapped geneLOC105371017 - LOC105371019
Upstream gene id105371017
Downstream gene id105371019
SNP gene ids
Upstream gene distance38471
Downstream gene distance42813
SNP risk allelers28479400-G
SNPsrs28479400
Merged0
SNP id current28479400
Contextregulatory_region_variant
Intergenic1
Allele frequency0.9494
P value0.000002
Pvalue mlog5.69897000433601
P value text(Case/control)
Or beta0.7864
%95 Ci[0.46-1.11] unit increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitneuritic plaque measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006798
Study accessionGCST002592