SNP Detail For rs28455997
1.Mapping Information
Human SNP ID rs28455997
Human chromosome chr8
Human SNP position 3219437
Pig chromosome chr15
Pig SNP position 39510756
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (CDC/AAP)
Initial sampleup to 3,915 European ancestry individuals
Replication sampleNA
Region8p23.2
Chromosome idchr8
Chromosome position3219437
Reported geneCSMD1
Mapped geneCSMD1
Upstream gene id
Downstream gene id
SNP gene ids64478
Upstream gene distance
Downstream gene distance
SNP risk allelers28455997-T
SNPsrs28455997
Merged0
SNP id current28455997
Contextmissense_variant
Intergenic0
Allele frequency0.84
P value0.000003
Pvalue mlog5.52287874528033
P value text(Age 20-60 years)
Or beta1.48
%95 Ci[1.26-1.75]
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002126