Human SNP ID | rs28455997 |
---|---|
Human chromosome | chr8 |
Human SNP position | 3219437 |
Pig chromosome | chr15 |
Pig SNP position | 39510756 |
PubMed ID | 24024966 |
---|---|
Journal | J Clin Periodontol |
Link | www.ncbi.nlm.nih.gov/pubmed/24024966 |
Study | Genome-wide association study of chronic periodontitis in a general German population. |
Disease/Trait | Periodontitis (CDC/AAP) |
Initial sample | up to 3,915 European ancestry individuals |
Replication sample | NA |
Region | 8p23.2 |
Chromosome id | chr8 |
Chromosome position | 3219437 |
Reported gene | CSMD1 |
Mapped gene | CSMD1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64478 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs28455997-T |
SNPs | rs28455997 |
Merged | 0 |
SNP id current | 28455997 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.84 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (Age 20-60 years) |
Or beta | 1.48 |
%95 Ci | [1.26-1.75] |
Platform | Affymetrix, Illumina [up to 17585496] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST002126 |