SNP Detail For rs2843012
1.Mapping Information
Human SNP ID rs2843012
Human chromosome chr6
Human SNP position 167988248
Pig chromosome chr1
Pig SNP position 2711573
2.Annotation Information
PubMed ID23319000
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23319000
StudyGenome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
Disease/TraitMetabolite levels (5-HIAA)
Initial sampleup to 398 European ancestry individuals
Replication sampleNA
Region6q27
Chromosome idchr6
Chromosome position167988248
Reported geneHGC6.1.1, MLLT4, KIF25, HGC6.3
Mapped geneHGC6.3 - KIF25-AS1
Upstream gene id100128124
Downstream gene id100505879
SNP gene ids
Upstream gene distance11309
Downstream gene distance5939
SNP risk allelers2843012-A
SNPsrs2843012
Merged0
SNP id current2843012
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.218
%95 Ciunit increase
PlatformIllumina [5767231] (imputed)
CNVN
Mapped trait5-HIAA measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005132
Study accessionGCST001820