Human SNP ID | rs2838088 |
---|---|
Human chromosome | chr21 |
Human SNP position | 41672041 |
Pig chromosome | chr13 |
Pig SNP position | 215325559 |
PubMed ID | 24025145 |
---|---|
Journal | Breast Cancer Res |
Link | www.ncbi.nlm.nih.gov/pubmed/24025145 |
Study | A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients. |
Disease/Trait | Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel) |
Initial sample | 57 Japanese ancestry cases, 63 Japanese ancestry controls |
Replication sample | NA |
Region | 21q22.3 |
Chromosome id | chr21 |
Chromosome position | 41672041 |
Reported gene | NCRNA00111 |
Mapped gene | LOC105372813 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372813 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2838088-A |
SNPs | rs2838088 |
Merged | 0 |
SNP id current | 2838088 |
Context | regulatory_region_variant |
Intergenic | 0 |
Allele frequency | 0.12 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (Dominant) |
Or beta | 4.48 |
%95 Ci | [2.32-8.66] |
Platform | Illumina [555600] |
CNV | N |
Mapped trait | chemotherapy-induced alopecia, response to paclitaxel |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005400, http://purl.obolibrary.org/obo/GO_1901555 |
Study accession | GCST002179 |