SNP Detail For rs2838088
1.Mapping Information
Human SNP ID rs2838088
Human chromosome chr21
Human SNP position 41672041
Pig chromosome chr13
Pig SNP position 215325559
2.Annotation Information
PubMed ID24025145
JournalBreast Cancer Res
Linkwww.ncbi.nlm.nih.gov/pubmed/24025145
StudyA genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.
Disease/TraitAdverse response to chemotherapy in breast cancer (alopecia) (paclitaxel)
Initial sample57 Japanese ancestry cases, 63 Japanese ancestry controls
Replication sampleNA
Region21q22.3
Chromosome idchr21
Chromosome position41672041
Reported geneNCRNA00111
Mapped geneLOC105372813
Upstream gene id
Downstream gene id
SNP gene ids105372813
Upstream gene distance
Downstream gene distance
SNP risk allelers2838088-A
SNPsrs2838088
Merged0
SNP id current2838088
Contextregulatory_region_variant
Intergenic0
Allele frequency0.12
P value0.000001
Pvalue mlog6
P value text(Dominant)
Or beta4.48
%95 Ci[2.32-8.66]
PlatformIllumina [555600]
CNVN
Mapped traitchemotherapy-induced alopecia, response to paclitaxel
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005400, http://purl.obolibrary.org/obo/GO_1901555
Study accessionGCST002179