SNP Detail For rs2836883
1.Mapping Information
Human SNP ID rs2836883
Human chromosome chr21
Human SNP position 39094818
Pig chromosome chr13
Pig SNP position 212768636
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region21q22.2
Chromosome idchr21
Chromosome position39094818
Reported geneNR
Mapped geneLOC102724740 - PSMG1
Upstream gene id102724740
Downstream gene id8624
SNP gene ids
Upstream gene distance75562
Downstream gene distance80628
SNP risk allelers2836883-?
SNPsrs2836883
Merged
SNP id current2836883
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value3E-48
Pvalue mlog47.5228787452803
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043