SNP Detail For rs2833197
1.Mapping Information
Human SNP ID rs2833197
Human chromosome chr21
Human SNP position 31034797
Pig chromosome chr13
Pig SNP position 204997770
2.Annotation Information
PubMed ID21844884
JournalPharmacogenomics J
Linkwww.ncbi.nlm.nih.gov/pubmed/21844884
StudyGenome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations
Disease/TraitResponse to platinum-based chemotherapy (cisplatin)
Initial sample176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines
Replication sampleNA
Region21q22.11
Chromosome idchr21
Chromosome position31034797
Reported geneintergenic
Mapped geneLOC105372774
Upstream gene id
Downstream gene id
SNP gene ids105372774
Upstream gene distance
Downstream gene distance
SNP risk allelers2833197-?
SNPsrs2833197
Merged0
SNP id current2833197
Contextdownstream_gene_variant
Intergenic0
Allele frequency
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta
%95 Ci
PlatformNR [~ 3000000] (imputed)
CNVN
Mapped traitresponse to cisplatin
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0072718
Study accessionGCST001201