SNP Detail For rs2828478
1.Mapping Information
Human SNP ID rs2828478
Human chromosome chr21
Human SNP position 23732894
Pig chromosome chr13
Pig SNP position 197349320
2.Annotation Information
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region21q21.2
Chromosome idchr21
Chromosome position23732894
Reported geneNR
Mapped geneLOC105372749 - LOC105372750
Upstream gene id105372749
Downstream gene id105372750
SNP gene ids
Upstream gene distance23593
Downstream gene distance79728
SNP risk allelers2828478-A
SNPsrs2828478
Merged
SNP id current2828478
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta1.06
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048