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SNP Detail For rs282708
1.Mapping Information
| Human SNP ID | rs282708 |
|---|---|
| Human chromosome | chr4 |
| Human SNP position | 58637561 |
| Pig chromosome | chr8 |
| Pig SNP position | 60802007 |
2.Annotation Information
| PubMed ID | 22076464 |
|---|---|
| Journal | Leukemia |
| Link | www.ncbi.nlm.nih.gov/pubmed/22076464 |
| Study | Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia. |
| Disease/Trait | Acute lymphoblastic leukemia (childhood) |
| Initial sample | 419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls |
| Replication sample | 951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls |
| Region | 4q13.1 |
| Chromosome id | chr4 |
| Chromosome position | 58637561 |
| Reported gene | intergenic |
| Mapped gene | LOC105377671 - LOC105377672 |
| Upstream gene id | 105377671 |
| Downstream gene id | 105377672 |
| SNP gene ids | |
| Upstream gene distance | 101182 |
| Downstream gene distance | 138861 |
| SNP risk allele | rs282708-A |
| SNPs | rs282708 |
| Merged | 0 |
| SNP id current | 282708 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.4 |
| P value | 0.000005 |
| Pvalue mlog | 5.30102999566398 |
| P value text | (ETV6-RUNX1 positive, Northern European) |
| Or beta | |
| %95 Ci | |
| Platform | Affymetrix [355750] |
| CNV | N |
| Mapped trait | acute lymphoblastic leukemia |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000220 |
| Study accession | GCST001320 |
| PubMed ID | 22076464 |
| Journal | Leukemia |
| Link | www.ncbi.nlm.nih.gov/pubmed/22076464 |
| Study | Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia. |
| Disease/Trait | Acute lymphoblastic leukemia (childhood) |
| Initial sample | 419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls |
| Replication sample | 951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls |
| Region | 4q13.1 |
| Chromosome id | chr4 |
| Chromosome position | 58637561 |
| Reported gene | intergenic |
| Mapped gene | LOC105377671 - LOC105377672 |
| Upstream gene id | 105377671 |
| Downstream gene id | 105377672 |
| SNP gene ids | |
| Upstream gene distance | 101182 |
| Downstream gene distance | 138861 |
| SNP risk allele | rs282708-A |
| SNPs | rs282708 |
| Merged | 0 |
| SNP id current | 282708 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.41 |
| P value | 0.000008 |
| Pvalue mlog | 5.09691001300805 |
| P value text | |
| Or beta | 1.23 |
| %95 Ci | [1.12-1.35 ] |
| Platform | Affymetrix [355750] |
| CNV | N |
| Mapped trait | acute lymphoblastic leukemia |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000220 |
| Study accession | GCST001320 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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