SNP Detail For rs2820446
1.Mapping Information
Human SNP ID rs2820446
Human chromosome chr1
Human SNP position 219575476
Pig chromosome chr10
Pig SNP position 11375710
2.Annotation Information
PubMed ID24509480
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24509480
StudyGenome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.
Disease/TraitType 2 diabetes
Initial sample12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ance
Replication sample21,491 European ancestry cases, 55,647 European ancestry controls
Region1q41
Chromosome idchr1
Chromosome position219575476
Reported geneLYPLAL1
Mapped geneLOC102723886 - ZC3H11B
Upstream gene id102723886
Downstream gene id643136
SNP gene ids
Upstream gene distance18196
Downstream gene distance32451
SNP risk allelers2820446-C
SNPsrs2820446
Merged0
SNP id current2820446
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.05
%95 Ci[1.03-1.07]
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002352