Human SNP ID | rs2819332 |
---|---|
Human chromosome | chr1 |
Human SNP position | 43539609 |
Pig chromosome | chr6 |
Pig SNP position | 155104584 |
PubMed ID | 22959728 |
---|---|
Journal | Neurobiol Aging |
Link | www.ncbi.nlm.nih.gov/pubmed/22959728 |
Study | Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1. |
Disease/Trait | Amyotrophic lateral sclerosis (age of onset) |
Initial sample | 4,243 European ancestry cases |
Replication sample | NA |
Region | 1p34.2 |
Chromosome id | chr1 |
Chromosome position | 43539609 |
Reported gene | PTPRF |
Mapped gene | PTPRF |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5792 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2819332-A |
SNPs | rs2819332 |
Merged | 0 |
SNP id current | 2819332 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.23 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (Meta) |
Or beta | |
%95 Ci | |
Platform | Illumina [254145] |
CNV | N |
Mapped trait | amyotrophic lateral sclerosis, age at onset |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000253, http://www.ebi.ac.uk/efo/EFO_0004847 |
Study accession | GCST001663 |