SNP Detail For rs2819332
1.Mapping Information
Human SNP ID rs2819332
Human chromosome chr1
Human SNP position 43539609
Pig chromosome chr6
Pig SNP position 155104584
2.Annotation Information
PubMed ID22959728
JournalNeurobiol Aging
Linkwww.ncbi.nlm.nih.gov/pubmed/22959728
StudyAge of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.
Disease/TraitAmyotrophic lateral sclerosis (age of onset)
Initial sample4,243 European ancestry cases
Replication sampleNA
Region1p34.2
Chromosome idchr1
Chromosome position43539609
Reported genePTPRF
Mapped genePTPRF
Upstream gene id
Downstream gene id
SNP gene ids5792
Upstream gene distance
Downstream gene distance
SNP risk allelers2819332-A
SNPsrs2819332
Merged0
SNP id current2819332
Contextintron_variant
Intergenic0
Allele frequency0.23
P value0.000005
Pvalue mlog5.30102999566398
P value text(Meta)
Or beta
%95 Ci
PlatformIllumina [254145]
CNVN
Mapped traitamyotrophic lateral sclerosis, age at onset
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000253, http://www.ebi.ac.uk/efo/EFO_0004847
Study accessionGCST001663