SNP Detail For rs281377
1.Mapping Information
Human SNP ID rs281377
Human chromosome chr19
Human SNP position 48703346
Pig chromosome chr6
Pig SNP position 49790403
2.Annotation Information
PubMed ID22001757
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22001757
StudyGenome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.
Disease/TraitLiver enzyme levels (alkaline phosphatase)
Initial sampleUp to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals
Replication sampleNA
Region19q13.33
Chromosome idchr19
Chromosome position48703346
Reported geneFUT2
Mapped geneFUT2
Upstream gene id
Downstream gene id
SNP gene ids2524
Upstream gene distance
Downstream gene distance
SNP risk allelers281377-T
SNPsrs281377
Merged0
SNP id current281377
Contextsynonymous_variant
Intergenic0
Allele frequency0.43
P value0.000000000000001
Pvalue mlog15
P value text
Or beta1.8
%95 Ci[0.80-2.80] % increase
PlatformAffymetrix, Illumina, Perlegen [~ 2600000] (imputed)
CNVN
Mapped traitalkaline phosphatase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004533
Study accessionGCST001276