Human SNP ID | rs281377 |
---|---|
Human chromosome | chr19 |
Human SNP position | 48703346 |
Pig chromosome | chr6 |
Pig SNP position | 49790403 |
PubMed ID | 22001757 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22001757 |
Study | Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. |
Disease/Trait | Liver enzyme levels (alkaline phosphatase) |
Initial sample | Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals |
Replication sample | NA |
Region | 19q13.33 |
Chromosome id | chr19 |
Chromosome position | 48703346 |
Reported gene | FUT2 |
Mapped gene | FUT2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2524 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs281377-T |
SNPs | rs281377 |
Merged | 0 |
SNP id current | 281377 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.43 |
P value | 0.000000000000001 |
Pvalue mlog | 15 |
P value text | |
Or beta | 1.8 |
%95 Ci | [0.80-2.80] % increase |
Platform | Affymetrix, Illumina, Perlegen [~ 2600000] (imputed) |
CNV | N |
Mapped trait | alkaline phosphatase measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004533 |
Study accession | GCST001276 |