SNP Detail For rs2808634
1.Mapping Information
Human SNP ID rs2808634
Human chromosome chr1
Human SNP position 159722783
Pig chromosome chr4
Pig SNP position 98749512
2.Annotation Information
PubMed ID22939635
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22939635
StudyGenome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.
Disease/TraitC-reactive protein
Initial sample8,280 African American female individuals, 3,548 Hispanic female individuals
Replication sample3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals
Region1q23.2
Chromosome idchr1
Chromosome position159722783
Reported geneFCER1A, DUSP23, OR10J1, APCS, DARC, IFI16, OR10J5, CRP, OR10J3, OLFML2B, FCRL6
Mapped geneCRP - RPL27P2
Upstream gene id1401
Downstream gene id646446
SNP gene ids
Upstream gene distance8174
Downstream gene distance36361
SNP risk allelers2808634-T
SNPsrs2808634
Merged0
SNP id current2808634
Contextintergenic_variant
Intergenic1
Allele frequency0.156
P value0.0000000003
Pvalue mlog9.52287874528033
P value text(AA women)
Or beta0.153
%95 Ci[0.11-0.20] unit decrease
PlatformAffymetrix [up to 2203609] (imputed)
CNVN
Mapped traitC-reactive protein measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004458
Study accessionGCST001650