Human SNP ID | rs2808630 |
---|---|
Human chromosome | chr1 |
Human SNP position | 159711078 |
Pig chromosome | chr4 |
Pig SNP position | 98759004 |
PubMed ID | 18385676 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18385676 |
Study | Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1. |
Disease/Trait | Lung cancer |
Initial sample | 1,154 European ancestry cases, 1,137 European ancestry controls |
Replication sample | 2,724 European ancestry cases, 3,694 European ancestry controls |
Region | 1q23.2 |
Chromosome id | chr1 |
Chromosome position | 159711078 |
Reported gene | CRP |
Mapped gene | APCS - CRP |
Upstream gene id | 325 |
Downstream gene id | 1401 |
SNP gene ids | |
Upstream gene distance | 122207 |
Downstream gene distance | 1211 |
SNP risk allele | rs2808630-G |
SNPs | rs2808630 |
Merged | 0 |
SNP id current | 2808630 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.22 |
%95 Ci | [1.10-1.35] |
Platform | Illumina [317498] |
CNV | N |
Mapped trait | lung carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001071 |
Study accession | GCST000172 |