SNP Detail For rs2808630
1.Mapping Information
Human SNP ID rs2808630
Human chromosome chr1
Human SNP position 159711078
Pig chromosome chr4
Pig SNP position 98759004
2.Annotation Information
PubMed ID18385676
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18385676
StudyGenome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1.
Disease/TraitLung cancer
Initial sample1,154 European ancestry cases, 1,137 European ancestry controls
Replication sample2,724 European ancestry cases, 3,694 European ancestry controls
Region1q23.2
Chromosome idchr1
Chromosome position159711078
Reported geneCRP
Mapped geneAPCS - CRP
Upstream gene id325
Downstream gene id1401
SNP gene ids
Upstream gene distance122207
Downstream gene distance1211
SNP risk allelers2808630-G
SNPsrs2808630
Merged0
SNP id current2808630
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.22
%95 Ci[1.10-1.35]
PlatformIllumina [317498]
CNVN
Mapped traitlung carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001071
Study accessionGCST000172