SNP Detail For rs2806971
1.Mapping Information
Human SNP ID rs2806971
Human chromosome chr13
Human SNP position 53079721
Pig chromosome chr11
Pig SNP position 27085266
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region13q14.3
Chromosome idchr13
Chromosome position53079721
Reported geneNR
Mapped geneOLFM4 - LINC01065
Upstream gene id10562
Downstream gene id102723875
SNP gene ids
Upstream gene distance27660
Downstream gene distance52025
SNP risk allelers2806971-A
SNPsrs2806971
Merged0
SNP id current2806971
Contextintergenic_variant
Intergenic1
Allele frequency0.37
P value0.000003
Pvalue mlog5.52287874528033
P value text(Trans-16:1n-7, EA)
Or beta0.0025
%95 Ci[0.0015-0.0035] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans fatty acid measurement, trans-16:1n-7 fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006822
Study accessionGCST002721