Human SNP ID | rs2806971 |
---|---|
Human chromosome | chr13 |
Human SNP position | 53079721 |
Pig chromosome | chr11 |
Pig SNP position | 27085266 |
PubMed ID | 25646338 |
---|---|
Journal | Am J Clin Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/25646338 |
Study | Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Trans fatty acid levels |
Initial sample | 8,013 European ancestry individuals |
Replication sample | 1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals |
Region | 13q14.3 |
Chromosome id | chr13 |
Chromosome position | 53079721 |
Reported gene | NR |
Mapped gene | OLFM4 - LINC01065 |
Upstream gene id | 10562 |
Downstream gene id | 102723875 |
SNP gene ids | |
Upstream gene distance | 27660 |
Downstream gene distance | 52025 |
SNP risk allele | rs2806971-A |
SNPs | rs2806971 |
Merged | 0 |
SNP id current | 2806971 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.37 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (Trans-16:1n-7, EA) |
Or beta | 0.0025 |
%95 Ci | [0.0015-0.0035] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | trans fatty acid measurement, trans-16:1n-7 fatty acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006822 |
Study accession | GCST002721 |