SNP Detail For rs2802493
1.Mapping Information
Human SNP ID rs2802493
Human chromosome chr10
Human SNP position 44058135
Pig chromosome chr14
Pig SNP position 100213983
2.Annotation Information
PubMed ID26249676
JournalWorld J Biol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/26249676
StudyGenetic underpinnings of left superior temporal gyrus thickness in patients with schizophrenia.
Disease/TraitLeft superior temporal gyrus thickness (schizophrenia interaction)
Initial sample113 schizophrenia cases, 126 controls
Replication sampleNA
Region10q11.21
Chromosome idchr10
Chromosome position44058135
Reported geneCXCL12
Mapped geneLINC00841 - LOC101929465
Upstream gene id283033
Downstream gene id101929465
SNP gene ids
Upstream gene distance88228
Downstream gene distance233953
SNP risk allelers2802493-C
SNPsrs2802493
Merged
SNP id current2802493
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.275
%95 Ci[NR] unit decrease
PlatformIllumina [1067955] (imputed)
CNVN
Mapped traitschizophrenia, left superior temporal gyrus thickness measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0007739
Study accessionGCST003069