Human SNP ID | rs2802493 |
---|---|
Human chromosome | chr10 |
Human SNP position | 44058135 |
Pig chromosome | chr14 |
Pig SNP position | 100213983 |
PubMed ID | 26249676 |
---|---|
Journal | World J Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/26249676 |
Study | Genetic underpinnings of left superior temporal gyrus thickness in patients with schizophrenia. |
Disease/Trait | Left superior temporal gyrus thickness (schizophrenia interaction) |
Initial sample | 113 schizophrenia cases, 126 controls |
Replication sample | NA |
Region | 10q11.21 |
Chromosome id | chr10 |
Chromosome position | 44058135 |
Reported gene | CXCL12 |
Mapped gene | LINC00841 - LOC101929465 |
Upstream gene id | 283033 |
Downstream gene id | 101929465 |
SNP gene ids | |
Upstream gene distance | 88228 |
Downstream gene distance | 233953 |
SNP risk allele | rs2802493-C |
SNPs | rs2802493 |
Merged | |
SNP id current | 2802493 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.275 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [1067955] (imputed) |
CNV | N |
Mapped trait | schizophrenia, left superior temporal gyrus thickness measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0007739 |
Study accession | GCST003069 |