SNP Detail For rs2800
1.Mapping Information
Human SNP ID rs2800
Human chromosome chr3
Human SNP position 143705980
Pig chromosome chr13
Pig SNP position 92130069
2.Annotation Information
PubMed ID20708005
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/20708005
StudyGenome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
Disease/TraitNon-alcoholic fatty liver disease histology (other)
Initial sample236 European ancestry cases
Replication sampleNA
Region3q24
Chromosome idchr3
Chromosome position143705980
Reported geneSLC9A9
Mapped geneSLC9A9
Upstream gene id
Downstream gene id
SNP gene ids285195
Upstream gene distance
Downstream gene distance
SNP risk allelers2800-G
SNPsrs2800
Merged0
SNP id current2800
Contextintron_variant
Intergenic0
Allele frequency0.34
P value0.000003
Pvalue mlog5.52287874528033
P value text(ALT)
Or beta0.61
%95 Ci[NR] unit increase
PlatformIllumina [324623]
CNVN
Mapped traitserum alanine aminotransferase measurement, non-alcoholic fatty liver disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004735, http://www.ebi.ac.uk/efo/EFO_0003095
Study accessionGCST000765