Human SNP ID | rs2800 |
---|---|
Human chromosome | chr3 |
Human SNP position | 143705980 |
Pig chromosome | chr13 |
Pig SNP position | 92130069 |
PubMed ID | 20708005 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/20708005 |
Study | Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease. |
Disease/Trait | Non-alcoholic fatty liver disease histology (other) |
Initial sample | 236 European ancestry cases |
Replication sample | NA |
Region | 3q24 |
Chromosome id | chr3 |
Chromosome position | 143705980 |
Reported gene | SLC9A9 |
Mapped gene | SLC9A9 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 285195 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2800-G |
SNPs | rs2800 |
Merged | 0 |
SNP id current | 2800 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.34 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (ALT) |
Or beta | 0.61 |
%95 Ci | [NR] unit increase |
Platform | Illumina [324623] |
CNV | N |
Mapped trait | serum alanine aminotransferase measurement, non-alcoholic fatty liver disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004735, http://www.ebi.ac.uk/efo/EFO_0003095 |
Study accession | GCST000765 |