SNP Detail For rs2798334
1.Mapping Information
Human SNP ID rs2798334
Human chromosome chr1
Human SNP position 111894722
Pig chromosome chr4
Pig SNP position 118638231
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral adipose tissue adjusted for BMI
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region1p13.2
Chromosome idchr1
Chromosome position111894722
Reported geneKCND3
Mapped geneKCND3
Upstream gene id
Downstream gene id
SNP gene ids3752
Upstream gene distance
Downstream gene distance
SNP risk allelers2798334-C
SNPsrs2798334
Merged0
SNP id current2798334
Contextintron_variant
Intergenic0
Allele frequency0.73
P value0.000001
Pvalue mlog6
P value text(women)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral adipose tissue measurement, body mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004765, http://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST001523
PubMed ID24850809
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24850809
StudyGenetic determinants of P wave duration and PR segment.
Disease/TraitP wave duration
Initial sample16,468 European ancestry individuals
Replication sampleNA
Region1p13.2
Chromosome idchr1
Chromosome position111894722
Reported geneKCND3
Mapped geneKCND3
Upstream gene id
Downstream gene id
SNP gene ids3752
Upstream gene distance
Downstream gene distance
SNP risk allelers2798334-T
SNPsrs2798334
Merged0
SNP id current2798334
Contextintron_variant
Intergenic0
Allele frequency0.289
P value0.00000000008
Pvalue mlog10.096910013008
P value text
Or beta0.918
%95 Ci[0.64-1.19] unit decrease
PlatformIllumina [2300000] (imputed)
CNVN
Mapped traitP wave duration
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005094
Study accessionGCST002457