Human SNP ID | rs2798334 |
---|---|
Human chromosome | chr1 |
Human SNP position | 111894722 |
Pig chromosome | chr4 |
Pig SNP position | 118638231 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Visceral adipose tissue adjusted for BMI |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 1p13.2 |
Chromosome id | chr1 |
Chromosome position | 111894722 |
Reported gene | KCND3 |
Mapped gene | KCND3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3752 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2798334-C |
SNPs | rs2798334 |
Merged | 0 |
SNP id current | 2798334 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.73 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (women) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | visceral adipose tissue measurement, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004765, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST001523 |
PubMed ID | 24850809 |
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24850809 |
Study | Genetic determinants of P wave duration and PR segment. |
Disease/Trait | P wave duration |
Initial sample | 16,468 European ancestry individuals |
Replication sample | NA |
Region | 1p13.2 |
Chromosome id | chr1 |
Chromosome position | 111894722 |
Reported gene | KCND3 |
Mapped gene | KCND3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3752 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2798334-T |
SNPs | rs2798334 |
Merged | 0 |
SNP id current | 2798334 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.289 |
P value | 0.00000000008 |
Pvalue mlog | 10.096910013008 |
P value text | |
Or beta | 0.918 |
%95 Ci | [0.64-1.19] unit decrease |
Platform | Illumina [2300000] (imputed) |
CNV | N |
Mapped trait | P wave duration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005094 |
Study accession | GCST002457 |