SNP Detail For rs2796441
1.Mapping Information
Human SNP ID rs2796441
Human chromosome chr9
Human SNP position 81694033
Pig chromosome chr1
Pig SNP position 261902741
2.Annotation Information
PubMed ID24509480
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24509480
StudyGenome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.
Disease/TraitType 2 diabetes
Initial sample12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ance
Replication sample21,491 European ancestry cases, 55,647 European ancestry controls
Region9q21.32
Chromosome idchr9
Chromosome position81694033
Reported geneTLE1
Mapped geneLOC101927502
Upstream gene id
Downstream gene id
SNP gene ids101927502
Upstream gene distance
Downstream gene distance
SNP risk allelers2796441-G
SNPsrs2796441
Merged0
SNP id current2796441
Contextintron_variant
Intergenic0
Allele frequency0.63
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.07
%95 Ci[1.03-1.12]
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002352
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region9q21.32
Chromosome idchr9
Chromosome position81694033
Reported geneNR
Mapped geneLOC101927502
Upstream gene id
Downstream gene id
SNP gene ids101927502
Upstream gene distance
Downstream gene distance
SNP risk allelers2796441-G
SNPsrs2796441
Merged0
SNP id current2796441
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta1.0638298
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048