Human SNP ID | rs2794520 |
---|---|
Human chromosome | chr1 |
Human SNP position | 159709026 |
Pig chromosome | chr4 |
Pig SNP position | 98761390 |
PubMed ID | 17903293 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/17903293 |
Study | Genome-wide association with select biomarker traits in the Framingham Heart Study. |
Disease/Trait | Select biomarker traits |
Initial sample | 1,012 European ancestry individuals |
Replication sample | NA |
Region | 1q23.2 |
Chromosome id | chr1 |
Chromosome position | 159709026 |
Reported gene | CRP |
Mapped gene | APCS - CRP |
Upstream gene id | 325 |
Downstream gene id | 1401 |
SNP gene ids | |
Upstream gene distance | 120155 |
Downstream gene distance | 3263 |
SNP risk allele | rs2794520-? |
SNPs | rs2794520 |
Merged | 0 |
SNP id current | 2794520 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | (CRP average 2,6,7) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [70897] |
CNV | N |
Mapped trait | C-reactive protein measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004458 |
Study accession | GCST000083 |
PubMed ID | 19060910 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19060910 |
Study | Genome-wide association analysis of metabolic traits in a birth cohort from a founder population. |
Disease/Trait | Metabolic traits |
Initial sample | 4,763 Northern Finnish founder individuals |
Replication sample | NA |
Region | 1q23.2 |
Chromosome id | chr1 |
Chromosome position | 159709026 |
Reported gene | CRP |
Mapped gene | APCS - CRP |
Upstream gene id | 325 |
Downstream gene id | 1401 |
SNP gene ids | |
Upstream gene distance | 120155 |
Downstream gene distance | 3263 |
SNP risk allele | rs2794520-A |
SNPs | rs2794520 |
Merged | 0 |
SNP id current | 2794520 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.36 |
P value | 3E-22 |
Pvalue mlog | 21.5228787452803 |
P value text | (CRP) |
Or beta | 0.47 |
%95 Ci | [0.32-0.62] mmol/l decrease |
Platform | Illumina [329091] |
CNV | N |
Mapped trait | inflammatory response |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0006954 |
Study accession | GCST000292 |
PubMed ID | 21300955 |
Journal | Circulation |
Link | www.ncbi.nlm.nih.gov/pubmed/21300955 |
Study | Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels. |
Disease/Trait | C-reactive protein levels |
Initial sample | 63,678 European ancestry individuals 1,792 Erasmus Ruchpen individuals, 715 Orcadian individuals |
Replication sample | 16,540 European ancestry individuals |
Region | 1q23.2 |
Chromosome id | chr1 |
Chromosome position | 159709026 |
Reported gene | CRP |
Mapped gene | APCS - CRP |
Upstream gene id | 325 |
Downstream gene id | 1401 |
SNP gene ids | |
Upstream gene distance | 120155 |
Downstream gene distance | 3263 |
SNP risk allele | rs2794520-C |
SNPs | rs2794520 |
Merged | 0 |
SNP id current | 2794520 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 2E-186 |
Pvalue mlog | 185.698970004336 |
P value text | |
Or beta | 0.16 |
%95 Ci | [0.15-0.17] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | C-reactive protein measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004458 |
Study accession | GCST000965 |