SNP Detail For rs2789047
1.Mapping Information
Human SNP ID rs2789047
Human chromosome chr6
Human SNP position 120868656
Pig chromosome chr1
Pig SNP position 45990658
2.Annotation Information
PubMed ID26030142
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26030142
StudyGenome-Wide Association Study of Serum Creatinine Levels during Vancomycin Therapy.
Disease/TraitPeak creatinine levels in vancomycin therapy
Initial sample489 European ancestry individuals
Replication sample439 European ancestry individuals
Region6q22.31
Chromosome idchr6
Chromosome position120868656
Reported geneGJA1, C6orf170, TBC1D32
Mapped geneMIR3144 - LOC105377977
Upstream gene id100422951
Downstream gene id105377977
SNP gene ids
Upstream gene distance853399
Downstream gene distance102338
SNP risk allelers2789047-A
SNPsrs2789047
Merged
SNP id current2789047
Contextintergenic_variant
Intergenic1
Allele frequency0.28
P value0.0000001
Pvalue mlog7
P value text
Or beta0.053
%95 Ci[0.033-0.073] unit decrease
PlatformIllumina [711284]
CNVN
Mapped traitresponse to vancomycin, serum creatinine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007647, http://www.ebi.ac.uk/efo/EFO_0004518
Study accessionGCST002948