Human SNP ID | rs2789047 |
---|---|
Human chromosome | chr6 |
Human SNP position | 120868656 |
Pig chromosome | chr1 |
Pig SNP position | 45990658 |
PubMed ID | 26030142 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26030142 |
Study | Genome-Wide Association Study of Serum Creatinine Levels during Vancomycin Therapy. |
Disease/Trait | Peak creatinine levels in vancomycin therapy |
Initial sample | 489 European ancestry individuals |
Replication sample | 439 European ancestry individuals |
Region | 6q22.31 |
Chromosome id | chr6 |
Chromosome position | 120868656 |
Reported gene | GJA1, C6orf170, TBC1D32 |
Mapped gene | MIR3144 - LOC105377977 |
Upstream gene id | 100422951 |
Downstream gene id | 105377977 |
SNP gene ids | |
Upstream gene distance | 853399 |
Downstream gene distance | 102338 |
SNP risk allele | rs2789047-A |
SNPs | rs2789047 |
Merged | |
SNP id current | 2789047 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.28 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 0.053 |
%95 Ci | [0.033-0.073] unit decrease |
Platform | Illumina [711284] |
CNV | N |
Mapped trait | response to vancomycin, serum creatinine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007647, http://www.ebi.ac.uk/efo/EFO_0004518 |
Study accession | GCST002948 |