SNP Detail For rs2788032
1.Mapping Information
Human SNP ID rs2788032
Human chromosome chr1
Human SNP position 53311959
Pig chromosome chr6
Pig SNP position 146581584
2.Annotation Information
PubMed ID23192594
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23192594
StudyGene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women__s Health Initiative SHARe Study.
Disease/TraitBody mass index (interaction)
Initial sample8,203 African American females, 3,484 Hispanic females
Replication sampleNA
Region1p32.3
Chromosome idchr1
Chromosome position53311959
Reported geneLRP8
Mapped geneLRP8
Upstream gene id
Downstream gene id
SNP gene ids7804
Upstream gene distance
Downstream gene distance
SNP risk allelers2788032-C
SNPsrs2788032
Merged0
SNP id current2788032
Contextintron_variant
Intergenic0
Allele frequency0.08
P value0.000006
Pvalue mlog5.22184874961635
P value text(Hispanic, Alcohol intake)
Or beta0.15
%95 Ci[0.09-0.22] unit increase
PlatformAffymetrix [706791]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST001753