Human SNP ID | rs2786111 |
---|---|
Human chromosome | chr1 |
Human SNP position | 197336969 |
Pig chromosome | chr10 |
Pig SNP position | 24772772 |
PubMed ID | 24925725 |
---|---|
Journal | J Am Soc Nephrol |
Link | www.ncbi.nlm.nih.gov/pubmed/24925725 |
Study | Lupus nephritis susceptibility Loci in women with systemic lupus erythematosus. |
Disease/Trait | Lupus nephritis in systemic lupus erythematosus |
Initial sample | 588 European ancestry cases, 1,412 European ancestry controls |
Replication sample | NA |
Region | 1q31.3 |
Chromosome id | chr1 |
Chromosome position | 197336969 |
Reported gene | F13B, ASPM, CRB1, ZBTB41, CFHR5 |
Mapped gene | CRB1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23418 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2786111-C |
SNPs | rs2786111 |
Merged | 0 |
SNP id current | 2786111 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (Recessive) |
Or beta | 2.26 |
%95 Ci | [1.60-3.19] |
Platform | Affymetrix, Illumina [1621689] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus, lupus nephritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690, http://www.ebi.ac.uk/efo/EFO_0005761 |
Study accession | GCST002479 |