Human SNP ID | rs2749097 |
---|---|
Human chromosome | chr1 |
Human SNP position | 63661797 |
Pig chromosome | chr6 |
Pig SNP position | 137169750 |
PubMed ID | 21665994 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21665994 |
Study | Genome-wide association study identifies two loci strongly affecting transferrin glycosylation. |
Disease/Trait | Alcohol consumption (transferrin glycosylation) |
Initial sample | 5,181 European ancestry individuals |
Replication sample | 2,284 European ancestry individauls |
Region | 1p31.3 |
Chromosome id | chr1 |
Chromosome position | 63661797 |
Reported gene | PGM1 |
Mapped gene | PGM1 - LOC105378771 |
Upstream gene id | 5236 |
Downstream gene id | 105378771 |
SNP gene ids | |
Upstream gene distance | 1552 |
Downstream gene distance | 7862 |
SNP risk allele | rs2749097-G |
SNPs | rs2749097 |
Merged | 0 |
SNP id current | 2749097 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.19 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | (CDT percent) |
Or beta | 0.12 |
%95 Ci | [0.08-0.16] unit decrease |
Platform | Affymetrix [390631] (imputed) |
CNV | N |
Mapped trait | alcohol drinking |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004329 |
Study accession | GCST001103 |