SNP Detail For rs2749097
1.Mapping Information
Human SNP ID rs2749097
Human chromosome chr1
Human SNP position 63661797
Pig chromosome chr6
Pig SNP position 137169750
2.Annotation Information
PubMed ID21665994
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21665994
StudyGenome-wide association study identifies two loci strongly affecting transferrin glycosylation.
Disease/TraitAlcohol consumption (transferrin glycosylation)
Initial sample5,181 European ancestry individuals
Replication sample2,284 European ancestry individauls
Region1p31.3
Chromosome idchr1
Chromosome position63661797
Reported genePGM1
Mapped genePGM1 - LOC105378771
Upstream gene id5236
Downstream gene id105378771
SNP gene ids
Upstream gene distance1552
Downstream gene distance7862
SNP risk allelers2749097-G
SNPsrs2749097
Merged0
SNP id current2749097
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.19
P value0.000000002
Pvalue mlog8.69897000433601
P value text(CDT percent)
Or beta0.12
%95 Ci[0.08-0.16] unit decrease
PlatformAffymetrix [390631] (imputed)
CNVN
Mapped traitalcohol drinking
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004329
Study accessionGCST001103