SNP Detail For rs2742417
1.Mapping Information
Human SNP ID rs2742417
Human chromosome chr3
Human SNP position 45689959
Pig chromosome chr13
Pig SNP position 31793568
2.Annotation Information
PubMed ID22041458
JournalPsychol Med
Linkwww.ncbi.nlm.nih.gov/pubmed/22041458
StudyPharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.
Disease/TraitResponse to anti-depressant treatment in major depressive disorder
Initial sample1,151 European ancestry cases, 288 African American cases
Replication sampleNA
Region3p21.31
Chromosome idchr3
Chromosome position45689959
Reported geneSACM1L
Mapped geneSACM1L
Upstream gene id
Downstream gene id
SNP gene ids22908
Upstream gene distance
Downstream gene distance
SNP risk allelers2742417-T
SNPsrs2742417
Merged0
SNP id current2742417
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.49
P value0.0000005
Pvalue mlog6.30102999566398
P value text(Bupropion, Sexual side effects)
Or beta
%95 Ci
PlatformAffymetrix [421789]
CNVN
Mapped traitantidepressant-induced sexual dysfunction, response to bupropion, response to antidepressant
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006322, http://www.ebi.ac.uk/efo/EFO_0006326, http://purl.obolibrary.org/obo/GO_0036276
Study accessionGCST001308