Human SNP ID | rs2742417 |
---|---|
Human chromosome | chr3 |
Human SNP position | 45689959 |
Pig chromosome | chr13 |
Pig SNP position | 31793568 |
PubMed ID | 22041458 |
---|---|
Journal | Psychol Med |
Link | www.ncbi.nlm.nih.gov/pubmed/22041458 |
Study | Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D. |
Disease/Trait | Response to anti-depressant treatment in major depressive disorder |
Initial sample | 1,151 European ancestry cases, 288 African American cases |
Replication sample | NA |
Region | 3p21.31 |
Chromosome id | chr3 |
Chromosome position | 45689959 |
Reported gene | SACM1L |
Mapped gene | SACM1L |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 22908 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2742417-T |
SNPs | rs2742417 |
Merged | 0 |
SNP id current | 2742417 |
Context | 5_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.49 |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | (Bupropion, Sexual side effects) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [421789] |
CNV | N |
Mapped trait | antidepressant-induced sexual dysfunction, response to bupropion, response to antidepressant |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006322, http://www.ebi.ac.uk/efo/EFO_0006326, http://purl.obolibrary.org/obo/GO_0036276 |
Study accession | GCST001308 |