SNP Detail For rs27419
1.Mapping Information
Human SNP ID rs27419
Human chromosome chr5
Human SNP position 53125108
Pig chromosome chr16
Pig SNP position 34445146
2.Annotation Information
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position53125108
Reported geneNR
Mapped geneLOC257396 - LOC105378965
Upstream gene id257396
Downstream gene id105378965
SNP gene ids
Upstream gene distance9982
Downstream gene distance174551
SNP risk allelers27419-C
SNPsrs27419
Merged
SNP id current27419
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.0526316
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048