Human SNP ID | rs273259 |
---|---|
Human chromosome | chr1 |
Human SNP position | 78628133 |
Pig chromosome | chr6 |
Pig SNP position | 124828969 |
PubMed ID | 25344690 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25344690 |
Study | Common variants associated with general and MMR vaccine-related febrile seizures. |
Disease/Trait | Febrile seizures |
Initial sample | 929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls |
Replication sample | Up to 408 European ancestry MMR vaccine-related febrile seizures cases, Up to 1,034 European ancestry MMR vaccine-unrelated febrile seizures cases, Up to 1,645 European ancestry controls |
Region | 1p31.1 |
Chromosome id | chr1 |
Chromosome position | 78628133 |
Reported gene | IFI44L |
Mapped gene | IFI44L |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10964 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs273259-A |
SNPs | rs273259 |
Merged | 0 |
SNP id current | 273259 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.694 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | (MMR-related vs MMR-unrelated) |
Or beta | 1.42 |
%95 Ci | [1.27-1.59] |
Platform | Illumina [up to 8129553] (imputed) |
CNV | N |
Mapped trait | febrile seizures, MMR-related febrile seizures |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0002373, http://www.ebi.ac.uk/efo/EFO_0006519 |
Study accession | GCST002672 |
PubMed ID | 25344690 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25344690 |
Study | Common variants associated with general and MMR vaccine-related febrile seizures. |
Disease/Trait | Febrile seizures (MMR vaccine-related) |
Initial sample | 929 European ancestry cases, 4,118 European ancestry controls |
Replication sample | Up to 408 European ancestry cases, Up to 1,645 European ancestry controls |
Region | 1p31.1 |
Chromosome id | chr1 |
Chromosome position | 78628133 |
Reported gene | IFI44L |
Mapped gene | IFI44L |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10964 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs273259-A |
SNPs | rs273259 |
Merged | 0 |
SNP id current | 273259 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.702 |
P value | 0.000000000006 |
Pvalue mlog | 11.2218487496163 |
P value text | |
Or beta | 1.41 |
%95 Ci | [1.28-1.55] |
Platform | Illumina [8129524] (imputed) |
CNV | N |
Mapped trait | MMR-related febrile seizures |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006519 |
Study accession | GCST002674 |