SNP Detail For rs2729409
1.Mapping Information
Human SNP ID rs2729409
Human chromosome chr18
Human SNP position 30561722
Pig chromosome chr6
Pig SNP position 107139024
2.Annotation Information
PubMed ID18464913
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18464913
StudyA genome-wide association study identifies protein quantitative trait loci (pQTLs).
Disease/TraitProtein quantitative trait loci
Initial sample1,200 European ancestry individuals
Replication sampleup to 4,590 European ancestry individuals
Region18q12.1
Chromosome idchr18
Chromosome position30561722
Reported geneDSC3
Mapped geneLOC105372047 - DSC3
Upstream gene id105372047
Downstream gene id1825
SNP gene ids
Upstream gene distance227738
Downstream gene distance427643
SNP risk allelers2729409-?
SNPsrs2729409
Merged0
SNP id current2729409
Contextintergenic_variant
Intergenic1
Allele frequency0.26
P value0.000003
Pvalue mlog5.52287874528033
P value text(Parathyroid hormone)
Or beta
%95 Ci
PlatformIllumina [496032]
CNVN
Mapped traitparathyroid hormone measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004752
Study accessionGCST000189