Human SNP ID | rs272889 |
---|---|
Human chromosome | chr5 |
Human SNP position | 132329685 |
Pig chromosome | chr2 |
Pig SNP position | 140030790 |
PubMed ID | 21886157 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/21886157 |
Study | Human metabolic individuality in biomedical and pharmaceutical research. |
Disease/Trait | Metabolic traits |
Initial sample | 2,820 European ancestry individuals |
Replication sample | NA |
Region | 5q31.1 |
Chromosome id | chr5 |
Chromosome position | 132329685 |
Reported gene | SLC22A4 |
Mapped gene | SLC22A4, LOC553103 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6583, 553103 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs272889-A |
SNPs | rs272889 |
Merged | 0 |
SNP id current | 272889 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.37 |
P value | 0.0000000000000007 |
Pvalue mlog | 15.1549019599857 |
P value text | (isovalerylcarnitine + 7 other traits) |
Or beta | 0.084 |
%95 Ci | [NR] unit increase |
Platform | Affymetrix, Illumina [534665] |
CNV | N |
Mapped trait | metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004725 |
Study accession | GCST001217 |
PubMed ID | 24816252 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24816252 |
Study | An atlas of genetic influences on human blood metabolites. |
Disease/Trait | Blood metabolite ratios |
Initial sample | Up to 5,591 European ancestry individuals |
Replication sample | Up to 1,767 European ancestry individuals |
Region | 5q31.1 |
Chromosome id | chr5 |
Chromosome position | 132329685 |
Reported gene | SLC22A4 |
Mapped gene | SLC22A4, LOC553103 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6583, 553103 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs272889-A |
SNPs | rs272889 |
Merged | 0 |
SNP id current | 272889 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.37 |
P value | 3E-51 |
Pvalue mlog | 50.5228787452803 |
P value text | (valine/isovalerylcarnitine) |
Or beta | 0.039 |
%95 Ci | [0.033-0.045] unit decrease |
Platform | Affymetrix, Illumina [2100000] (imputed) |
CNV | N |
Mapped trait | blood metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005664 |
Study accession | GCST002442 |