SNP Detail For rs2725236
1.Mapping Information
Human SNP ID rs2725236
Human chromosome chr4
Human SNP position 87997954
Pig chromosome chr8
Pig SNP position 140299239
2.Annotation Information
PubMed ID21490707
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21490707
StudyGenome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.
Disease/TraitCaffeine consumption
Initial sample47,431 European ancestry individuals
Replication sampleNA
Region4q22.1
Chromosome idchr4
Chromosome position87997954
Reported geneintergenic
Mapped geneSPP1 - LOC105377325
Upstream gene id6696
Downstream gene id105377325
SNP gene ids
Upstream gene distance14543
Downstream gene distance1412
SNP risk allelers2725236-A
SNPsrs2725236
Merged0
SNP id current2725236
Contextupstream_gene_variant
Intergenic1
Allele frequency0.48
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.065
%95 Ci[0.04-0.10] mg/day decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitcoffee consumption
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004330
Study accessionGCST001032