Human SNP ID | rs2725236 |
---|---|
Human chromosome | chr4 |
Human SNP position | 87997954 |
Pig chromosome | chr8 |
Pig SNP position | 140299239 |
PubMed ID | 21490707 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21490707 |
Study | Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption. |
Disease/Trait | Caffeine consumption |
Initial sample | 47,431 European ancestry individuals |
Replication sample | NA |
Region | 4q22.1 |
Chromosome id | chr4 |
Chromosome position | 87997954 |
Reported gene | intergenic |
Mapped gene | SPP1 - LOC105377325 |
Upstream gene id | 6696 |
Downstream gene id | 105377325 |
SNP gene ids | |
Upstream gene distance | 14543 |
Downstream gene distance | 1412 |
SNP risk allele | rs2725236-A |
SNPs | rs2725236 |
Merged | 0 |
SNP id current | 2725236 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.48 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.065 |
%95 Ci | [0.04-0.10] mg/day decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | coffee consumption |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004330 |
Study accession | GCST001032 |