SNP Detail For rs2721173
1.Mapping Information
Human SNP ID rs2721173
Human chromosome chr8
Human SNP position 144519045
Pig chromosome chr4
Pig SNP position 376978
2.Annotation Information
PubMed ID25201988
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/25201988
StudyCommon genetic variants associated with cognitive performance identified using the proxy-phenotype method.
Disease/TraitEducational attainment
Initial sample106,736 European ancestry individuals
Replication sampleNA
Region8q24.3
Chromosome idchr8
Chromosome position144519045
Reported geneGPT, PPP1R16A, VPS28, MFSD3, RECQL4, LRRC14, ARHGAP39, FOXH1, KIFC2, CYHR1, CPSF1, SCRT1, LRRC24
Mapped geneLRRC14
Upstream gene id
Downstream gene id
SNP gene ids9684
Upstream gene distance
Downstream gene distance
SNP risk allelers2721173-T
SNPsrs2721173
Merged0
SNP id current2721173
Contextintron_variant
Intergenic0
Allele frequency0.473
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta0.02
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitself reported educational attainment
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004784
Study accessionGCST002598