Human SNP ID | rs2720460 |
---|---|
Human chromosome | chr4 |
Human SNP position | 103133529 |
Pig chromosome | chr8 |
Pig SNP position | 126819128 |
PubMed ID | 23666240 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23666240 |
Study | Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14. |
Disease/Trait | Testicular germ cell tumor |
Initial sample | 986 European ancestry cases, 4,946 European ancestry controls |
Replication sample | 1,064 European ancestry cases, 10,082 European ancestry controls |
Region | 4q24 |
Chromosome id | chr4 |
Chromosome position | 103133529 |
Reported gene | CENPE |
Mapped gene | CENPE |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1062 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2720460-A |
SNPs | rs2720460 |
Merged | 0 |
SNP id current | 2720460 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.61 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 1.24 |
%95 Ci | [1.12-1.36] |
Platform | Illumina [307291] |
CNV | N |
Mapped trait | testicular carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005088 |
Study accession | GCST002022 |
PubMed ID | 25877299 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25877299 |
Study | Two new loci and gene sets related to sex determination and cancer progression are associated with susceptibility to testicular germ cell tumor. |
Disease/Trait | Testicular germ cell tumor |
Initial sample | 1,326 European ancestry cases, 6,687 European ancestry controls |
Replication sample | 710 European ancestry case-parent triads, 289 European ancestry cases, 290 European ancestry controls |
Region | 4q24 |
Chromosome id | chr4 |
Chromosome position | 103133529 |
Reported gene | CENPE |
Mapped gene | CENPE |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1062 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2720460-A |
SNPs | rs2720460 |
Merged | 0 |
SNP id current | 2720460 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.594 |
P value | 0.000000000006 |
Pvalue mlog | 11.2218487496163 |
P value text | |
Or beta | 1.32 |
%95 Ci | [NR] |
Platform | Illumina [610240] |
CNV | N |
Mapped trait | Testicular Germ Cell Tumor |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1000566 |
Study accession | GCST002855 |