SNP Detail For rs2718812
1.Mapping Information
Human SNP ID rs2718812
Human chromosome chr3
Human SNP position 133680858
Pig chromosome chr13
Pig SNP position 82369038
2.Annotation Information
PubMed ID19084217
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19084217
StudyVariants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.
Disease/TraitIron status biomarkers
Initial sample459 European ancestry twin pairs
Replication sampleNA
Region3q22.1
Chromosome idchr3
Chromosome position133680858
Reported geneTOPBP1
Mapped geneTF
Upstream gene id
Downstream gene id
SNP gene ids7018
Upstream gene distance
Downstream gene distance
SNP risk allelers2718812-?
SNPsrs2718812
Merged0
SNP id current2718812
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(serum transferrin)
Or beta
%95 Ci
PlatformIllumina [315887]
CNVN
Mapped traitiron biomarker measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004461
Study accessionGCST000301