SNP Detail For rs2717128
1.Mapping Information
Human SNP ID rs2717128
Human chromosome chr18
Human SNP position 77275676
Pig chromosome chr1
Pig SNP position 162976005
2.Annotation Information
PubMed ID20031603
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20031603
StudyA genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.
Disease/TraitRR interval (heart rate)
Initial sample2,325 European ancestry individuals
Replication sampleNA
Region18q23
Chromosome idchr18
Chromosome position77275676
Reported geneintergenic
Mapped geneGALR1 - LINC01029
Upstream gene id2587
Downstream gene id101927715
SNP gene ids
Upstream gene distance5534
Downstream gene distance695618
SNP risk allelers2717128-G
SNPsrs2717128
Merged0
SNP id current2717128
Context3_prime_UTR_variant
Intergenic1
Allele frequency0.14
P value0.000001
Pvalue mlog6
P value text
Or beta0.19
%95 Ci[0.11-0.27] unit decrease
PlatformIllumina [~ 318327]
CNVN
Mapped traitRR interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004831
Study accessionGCST000451