Human SNP ID | rs2716734 |
---|---|
Human chromosome | chr2 |
Human SNP position | 39720581 |
Pig chromosome | chr3 |
Pig SNP position | 106681619 |
PubMed ID | 20932654 |
---|---|
Journal | Int J Radiat Oncol Biol Phys |
Link | www.ncbi.nlm.nih.gov/pubmed/20932654 |
Study | Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer. |
Disease/Trait | Erectile dysfunction and prostate cancer treatment |
Initial sample | 27 African American cases, 52 African American controls |
Replication sample | NA |
Region | 2p22.1 |
Chromosome id | chr2 |
Chromosome position | 39720581 |
Reported gene | TMEM178 |
Mapped gene | TMEM178A - THUMPD2 |
Upstream gene id | 130733 |
Downstream gene id | 80745 |
SNP gene ids | |
Upstream gene distance | 2618 |
Downstream gene distance | 15479 |
SNP risk allele | rs2716734-? |
SNPs | rs2716734 |
Merged | 0 |
SNP id current | 2716734 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.14 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 5.97 |
%95 Ci | [NR] |
Platform | Affymetrix [512497] |
CNV | N |
Mapped trait | response to radiation, prostate carcinoma, erectile dysfunction |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0009314, http://www.ebi.ac.uk/efo/EFO_0001663, http://www.ebi.ac.uk/efo/EFO_0004234 |
Study accession | GCST000824 |