SNP Detail For rs2716734
1.Mapping Information
Human SNP ID rs2716734
Human chromosome chr2
Human SNP position 39720581
Pig chromosome chr3
Pig SNP position 106681619
2.Annotation Information
PubMed ID20932654
JournalInt J Radiat Oncol Biol Phys
Linkwww.ncbi.nlm.nih.gov/pubmed/20932654
StudyGenome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.
Disease/TraitErectile dysfunction and prostate cancer treatment
Initial sample27 African American cases, 52 African American controls
Replication sampleNA
Region2p22.1
Chromosome idchr2
Chromosome position39720581
Reported geneTMEM178
Mapped geneTMEM178A - THUMPD2
Upstream gene id130733
Downstream gene id80745
SNP gene ids
Upstream gene distance2618
Downstream gene distance15479
SNP risk allelers2716734-?
SNPsrs2716734
Merged0
SNP id current2716734
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.14
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta5.97
%95 Ci[NR]
PlatformAffymetrix [512497]
CNVN
Mapped traitresponse to radiation, prostate carcinoma, erectile dysfunction
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0009314, http://www.ebi.ac.uk/efo/EFO_0001663, http://www.ebi.ac.uk/efo/EFO_0004234
Study accessionGCST000824