SNP Detail For rs2710833
1.Mapping Information
Human SNP ID rs2710833
Human chromosome chr4
Human SNP position 168488807
Pig chromosome chr14
Pig SNP position 22414999
2.Annotation Information
PubMed ID20708005
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/20708005
StudyGenome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
Disease/TraitNon-alcoholic fatty liver disease histology (AST)
Initial sample236 European ancestry cases
Replication sampleNA
Region4q32.3
Chromosome idchr4
Chromosome position168488807
Reported geneDDX60L, PALLD
Mapped geneDDX60L - PALLD
Upstream gene id91351
Downstream gene id23022
SNP gene ids
Upstream gene distance8292
Downstream gene distance8257
SNP risk allelers2710833-A
SNPsrs2710833
Merged0
SNP id current2710833
Contextintron_variant
Intergenic1
Allele frequency0.17
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta0.41
%95 Ci[NR] unit increase
PlatformIllumina [324623]
CNVN
Mapped traitnon-alcoholic fatty liver disease, cirrhosis of liver
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422
Study accessionGCST000767