SNP Detail For rs2708240
1.Mapping Information
Human SNP ID rs2708240
Human chromosome chr7
Human SNP position 147880445
Pig chromosome chr9
Pig SNP position 121214533
2.Annotation Information
PubMed ID23459443
JournalPharmacogenomics J
Linkwww.ncbi.nlm.nih.gov/pubmed/23459443
StudyDrug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.
Disease/TraitQT interval (interaction)
Initial sample33,781 European ancestry individuals
Replication sampleNA
Region7q35
Chromosome idchr7
Chromosome position147880445
Reported geneCNTNAP2
Mapped geneCNTNAP2
Upstream gene id
Downstream gene id
SNP gene ids26047
Upstream gene distance
Downstream gene distance
SNP risk allelers2708240-A
SNPsrs2708240
Merged0
SNP id current2708240
Contextintron_variant
Intergenic0
Allele frequency0.51
P value0.000004
Pvalue mlog5.39794000867203
P value text(Tri-Tetra/cyclic antidepressants)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitQT interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004682
Study accessionGCST001890