SNP Detail For rs270602
1.Mapping Information
Human SNP ID rs270602
Human chromosome chr5
Human SNP position 132321007
Pig chromosome chr2
Pig SNP position 140022946
2.Annotation Information
PubMed ID26068415
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26068415
StudyGenome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.
Disease/TraitAcylcarnitine levels
Initial sampleup to 7,478 European ancestry individuals
Replication sample1,182 European ancestry individuals
Region5q31.1
Chromosome idchr5
Chromosome position132321007
Reported geneSLC22A4, SLC22A5
Mapped geneLOC553103, SLC22A4
Upstream gene id
Downstream gene id
SNP gene ids553103, 6583
Upstream gene distance
Downstream gene distance
SNP risk allelers270602-T
SNPsrs270602
Merged
SNP id current270602
Contextintron_variant
Intergenic0
Allele frequency0.3826
P value0.000000000000002
Pvalue mlog14.698970004336
P value text(Acetylcarnitine)
Or beta0.0505
%95 Ci[0.038-0.063] unit increase
PlatformAffymetrix, Illumina [at least 296619] (imputed)
CNVN
Mapped traitacylcarnitine measurement, blood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005059, http://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002961