Human SNP ID | rs270602 |
---|---|
Human chromosome | chr5 |
Human SNP position | 132321007 |
Pig chromosome | chr2 |
Pig SNP position | 140022946 |
PubMed ID | 26068415 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26068415 |
Study | Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels. |
Disease/Trait | Acylcarnitine levels |
Initial sample | up to 7,478 European ancestry individuals |
Replication sample | 1,182 European ancestry individuals |
Region | 5q31.1 |
Chromosome id | chr5 |
Chromosome position | 132321007 |
Reported gene | SLC22A4, SLC22A5 |
Mapped gene | LOC553103, SLC22A4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 553103, 6583 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs270602-T |
SNPs | rs270602 |
Merged | |
SNP id current | 270602 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.3826 |
P value | 0.000000000000002 |
Pvalue mlog | 14.698970004336 |
P value text | (Acetylcarnitine) |
Or beta | 0.0505 |
%95 Ci | [0.038-0.063] unit increase |
Platform | Affymetrix, Illumina [at least 296619] (imputed) |
CNV | N |
Mapped trait | acylcarnitine measurement, blood metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005059, http://www.ebi.ac.uk/efo/EFO_0005664 |
Study accession | GCST002961 |