Human SNP ID | rs270545 |
---|---|
Human chromosome | chr5 |
Human SNP position | 38051491 |
Pig chromosome | chr16 |
Pig SNP position | 24457195 |
PubMed ID | 20125088 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/20125088 |
Study | Genome-wide association study of recurrent early-onset major depressive disorder. |
Disease/Trait | Major depressive disorder |
Initial sample | 1,020 European ancestry cases, 1,636 European ancestry controls |
Replication sample | NA |
Region | 5p13.2 |
Chromosome id | chr5 |
Chromosome position | 38051491 |
Reported gene | GDNF |
Mapped gene | LOC105374731 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105374731 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs270545-G |
SNPs | rs270545 |
Merged | 0 |
SNP id current | 270545 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.69 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.37 |
%95 Ci | |
Platform | Affymetrix [671424] |
CNV | N |
Mapped trait | unipolar depression |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761 |
Study accession | GCST000578 |