SNP Detail For rs270545
1.Mapping Information
Human SNP ID rs270545
Human chromosome chr5
Human SNP position 38051491
Pig chromosome chr16
Pig SNP position 24457195
2.Annotation Information
PubMed ID20125088
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20125088
StudyGenome-wide association study of recurrent early-onset major depressive disorder.
Disease/TraitMajor depressive disorder
Initial sample1,020 European ancestry cases, 1,636 European ancestry controls
Replication sampleNA
Region5p13.2
Chromosome idchr5
Chromosome position38051491
Reported geneGDNF
Mapped geneLOC105374731
Upstream gene id
Downstream gene id
SNP gene ids105374731
Upstream gene distance
Downstream gene distance
SNP risk allelers270545-G
SNPsrs270545
Merged0
SNP id current270545
Contextintron_variant
Intergenic0
Allele frequency0.69
P value0.000001
Pvalue mlog6
P value text
Or beta1.37
%95 Ci
PlatformAffymetrix [671424]
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST000578