Human SNP ID | rs2698530 |
---|---|
Human chromosome | chr2 |
Human SNP position | 64276761 |
Pig chromosome | chr3 |
Pig SNP position | 81468253 |
PubMed ID | 21483845 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/21483845 |
Study | Genome-wide association study identifies genetic loci associated with iron deficiency. |
Disease/Trait | Iron status biomarkers |
Initial sample | 336 European ancestry iron deficiency cases, 343 European ancestry controls |
Replication sample | 71 European ancestry iron deficiency cases, 161 European ancestry controls |
Region | 2p14 |
Chromosome id | chr2 |
Chromosome position | 64276761 |
Reported gene | intergenic |
Mapped gene | LOC100507006 - LOC105374768 |
Upstream gene id | 100507006 |
Downstream gene id | 105374768 |
SNP gene ids | |
Upstream gene distance | 24230 |
Downstream gene distance | 26108 |
SNP risk allele | rs2698530-C |
SNPs | rs2698530 |
Merged | 0 |
SNP id current | 2698530 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (Transferrin saturation) |
Or beta | 20 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [331060] |
CNV | N |
Mapped trait | anemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004272 |
Study accession | GCST001021 |
PubMed ID | 21483845 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/21483845 |
Study | Genome-wide association study identifies genetic loci associated with iron deficiency. |
Disease/Trait | Iron status biomarkers |
Initial sample | 336 European ancestry iron deficiency cases, 343 European ancestry controls |
Replication sample | 71 European ancestry iron deficiency cases, 161 European ancestry controls |
Region | 2p14 |
Chromosome id | chr2 |
Chromosome position | 64276761 |
Reported gene | intergenic |
Mapped gene | LOC100507006 - LOC105374768 |
Upstream gene id | 100507006 |
Downstream gene id | 105374768 |
SNP gene ids | |
Upstream gene distance | 24230 |
Downstream gene distance | 26108 |
SNP risk allele | rs2698530-C |
SNPs | rs2698530 |
Merged | 0 |
SNP id current | 2698530 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (Total iron-binding capacity) |
Or beta | 20.72 |
%95 Ci | [NR] ug/dL increase |
Platform | Illumina [331060] |
CNV | N |
Mapped trait | anemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004272 |
Study accession | GCST001021 |
PubMed ID | 21483845 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/21483845 |
Study | Genome-wide association study identifies genetic loci associated with iron deficiency. |
Disease/Trait | Iron status biomarkers |
Initial sample | 336 European ancestry iron deficiency cases, 343 European ancestry controls |
Replication sample | 71 European ancestry iron deficiency cases, 161 European ancestry controls |
Region | 2p14 |
Chromosome id | chr2 |
Chromosome position | 64276761 |
Reported gene | intergenic |
Mapped gene | LOC100507006 - LOC105374768 |
Upstream gene id | 100507006 |
Downstream gene id | 105374768 |
SNP gene ids | |
Upstream gene distance | 24230 |
Downstream gene distance | 26108 |
SNP risk allele | rs2698530-C |
SNPs | rs2698530 |
Merged | 0 |
SNP id current | 2698530 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | (Unsaturated iron-binding capacity) |
Or beta | 28.75 |
%95 Ci | [NR] ug/dL increase |
Platform | Illumina [331060] |
CNV | N |
Mapped trait | anemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004272 |
Study accession | GCST001021 |