SNP Detail For rs2688608
1.Mapping Information
Human SNP ID rs2688608
Human chromosome chr10
Human SNP position 73898591
Pig chromosome chr14
Pig SNP position 82738379
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region10q22.2
Chromosome idchr10
Chromosome position73898591
Reported geneNR
Mapped geneCAMK2G - PLAU
Upstream gene id818
Downstream gene id5328
SNP gene ids
Upstream gene distance24000
Downstream gene distance10591
SNP risk allelers2688608-?
SNPsrs2688608
Merged
SNP id current2688608
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.0000000003
Pvalue mlog9.52287874528033
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043