SNP Detail For rs2688325
1.Mapping Information
Human SNP ID rs2688325
Human chromosome chr8
Human SNP position 3909688
Pig chromosome chr15
Pig SNP position 40114244
2.Annotation Information
PubMed ID25231870
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25231870
StudyParent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
Disease/TraitMenarche (age at onset)
Initial sampleUp to 182,413 European ancestry females
Replication sampleNA
Region8p23.2
Chromosome idchr8
Chromosome position3909688
Reported geneCSMD1
Mapped geneCSMD1
Upstream gene id
Downstream gene id
SNP gene ids64478
Upstream gene distance
Downstream gene distance
SNP risk allelers2688325-T
SNPsrs2688325
Merged0
SNP id current2688325
Contextintron_variant
Intergenic0
Allele frequency0.29
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta0.03
%95 Ci[0.018-0.042] unit increase
PlatformAffymetrix, Illumina [2441815] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST002541