SNP Detail For rs268134
1.Mapping Information
Human SNP ID rs268134
Human chromosome chr2
Human SNP position 65381229
Pig chromosome chr3
Pig SNP position 80372677
2.Annotation Information
PubMed ID26502338
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26502338
StudyGenetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.
Disease/TraitSystemic lupus erythematosus
Initial sample5,201 European ancestry cases, 9,066 European ancestry controls
Replication sampleNA
Region2p14
Chromosome idchr2
Chromosome position65381229
Reported geneSPRED2
Mapped geneSPRED2
Upstream gene id
Downstream gene id
SNP gene ids200734
Upstream gene distance
Downstream gene distance
SNP risk allelers268134-G
SNPsrs268134
Merged
SNP id current268134
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000000001
Pvalue mlog10
P value text
Or beta1.21
%95 Ci[NR]
PlatformIllumina [> 644674] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003156