SNP Detail For rs268
1.Mapping Information
Human SNP ID rs268
Human chromosome chr8
Human SNP position 19956018
Pig chromosome chr1
Pig SNP position 108655455
2.Annotation Information
PubMed ID22399527
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22399527
StudyGenome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.
Disease/TraitMetabolic syndrome
Initial sample2,637 European ancestry cases, 7,927 European ancestry controls
Replication sampleNA
Region8p21.3
Chromosome idchr8
Chromosome position19956018
Reported geneLPL
Mapped geneLPL
Upstream gene id
Downstream gene id
SNP gene ids4023
Upstream gene distance
Downstream gene distance
SNP risk allelers268-G
SNPsrs268
Merged0
SNP id current268
Contextmissense_variant
Intergenic0
Allele frequency0.02
P value0.000000000002
Pvalue mlog11.698970004336
P value text(HDL)
Or beta0.38
%95 Ci[NR] mmol/l decrease
PlatformIllumina [1257079] (imputed)
CNVN
Mapped traitmetabolic syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000195
Study accessionGCST001436