SNP Detail For rs2678379
1.Mapping Information
Human SNP ID rs2678379
Human chromosome chr2
Human SNP position 21003688
Pig chromosome chr3
Pig SNP position 125347348
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitHDL cholesterol
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region2p24.1
Chromosome idchr2
Chromosome position21003688
Reported geneAPOB
Mapped geneAPOB
Upstream gene id
Downstream gene id
SNP gene ids338
Upstream gene distance
Downstream gene distance
SNP risk allelers2678379-A
SNPsrs2678379
Merged
SNP id current2678379
Contextintron_variant
Intergenic0
Allele frequency0.24
P value7E-21
Pvalue mlog20.1549019599857
P value text
Or beta0.065
%95 Ci[0.051-0.079] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002899