SNP Detail For rs2677780
1.Mapping Information
Human SNP ID rs2677780
Human chromosome chr4
Human SNP position 16020917
Pig chromosome chr8
Pig SNP position 10906294
2.Annotation Information
PubMed ID23470693
JournalJ Dent Res
Linkwww.ncbi.nlm.nih.gov/pubmed/23470693
StudyGenome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.
Disease/TraitSmooth-surface caries
Initial sample982 European ancestry individuals
Replication sampleNA
Region4p15.32
Chromosome idchr4
Chromosome position16020917
Reported geneNR
Mapped genePROM1
Upstream gene id
Downstream gene id
SNP gene ids8842
Upstream gene distance
Downstream gene distance
SNP risk allelers2677780-A
SNPsrs2677780
Merged0
SNP id current2677780
Contextintron_variant
Intergenic0
Allele frequency0.9356
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta6.3471
%95 Ci[NR] unit decrease
PlatformIllumina [1200000] (imputed)
CNVN
Mapped traitsmooth surface dental caries
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006339
Study accessionGCST001896