Human SNP ID | rs2677780 |
---|---|
Human chromosome | chr4 |
Human SNP position | 16020917 |
Pig chromosome | chr8 |
Pig SNP position | 10906294 |
PubMed ID | 23470693 |
---|---|
Journal | J Dent Res |
Link | www.ncbi.nlm.nih.gov/pubmed/23470693 |
Study | Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition. |
Disease/Trait | Smooth-surface caries |
Initial sample | 982 European ancestry individuals |
Replication sample | NA |
Region | 4p15.32 |
Chromosome id | chr4 |
Chromosome position | 16020917 |
Reported gene | NR |
Mapped gene | PROM1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8842 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2677780-A |
SNPs | rs2677780 |
Merged | 0 |
SNP id current | 2677780 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.9356 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 6.3471 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [1200000] (imputed) |
CNV | N |
Mapped trait | smooth surface dental caries |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006339 |
Study accession | GCST001896 |