SNP Detail For rs2676917
1.Mapping Information
Human SNP ID rs2676917
Human chromosome chr3
Human SNP position 195017144
Pig chromosome chr13
Pig SNP position 141544437
2.Annotation Information
PubMed ID23934736
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/23934736
StudyGenome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.
Disease/TraitMetabolite levels (Pyroglutamine)
Initial sample1,260 African American individuals
Replication sampleNA
Region3q29
Chromosome idchr3
Chromosome position195017144
Reported geneC3orf21
Mapped geneLOC105374295 - XXYLT1
Upstream gene id105374295
Downstream gene id152002
SNP gene ids
Upstream gene distance2270
Downstream gene distance51132
SNP risk allelers2676917-G
SNPsrs2676917
Merged0
SNP id current2676917
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta0.12
%95 Ci[0.07-0.17] unit increase
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitpyroglutamine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005408
Study accessionGCST002118