Human SNP ID | rs2676917 |
---|---|
Human chromosome | chr3 |
Human SNP position | 195017144 |
Pig chromosome | chr13 |
Pig SNP position | 141544437 |
PubMed ID | 23934736 |
---|---|
Journal | Genet Epidemiol |
Link | www.ncbi.nlm.nih.gov/pubmed/23934736 |
Study | Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study. |
Disease/Trait | Metabolite levels (Pyroglutamine) |
Initial sample | 1,260 African American individuals |
Replication sample | NA |
Region | 3q29 |
Chromosome id | chr3 |
Chromosome position | 195017144 |
Reported gene | C3orf21 |
Mapped gene | LOC105374295 - XXYLT1 |
Upstream gene id | 105374295 |
Downstream gene id | 152002 |
SNP gene ids | |
Upstream gene distance | 2270 |
Downstream gene distance | 51132 |
SNP risk allele | rs2676917-G |
SNPs | rs2676917 |
Merged | 0 |
SNP id current | 2676917 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 0.12 |
%95 Ci | [0.07-0.17] unit increase |
Platform | Affymetrix [~ 2500000] (imputed) |
CNV | N |
Mapped trait | pyroglutamine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005408 |
Study accession | GCST002118 |